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LOC108323892 uncharacterized LOC108323892 [ Vigna angularis (adzuki bean) ]

Gene ID: 108323892, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108323892
Gene description
uncharacterized LOC108323892
Locus tag
HKW66_Vig0027840
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108323892 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 1 NC_068970.1 (10604231..10606966, complement)
100 previous assembly Vigan1.1 (GCF_001190045.1) 1 NC_030637.1 (34079190..34081990)

Chromosome 1 - NC_068970.1Genomic Context describing neighboring genes Neighboring gene mitotic-spindle organizing protein 1B Neighboring gene protein RADIALIS-like 2 Neighboring gene uncharacterized LOC108329592 Neighboring gene uncharacterized LOC108329586

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC108323892
Names
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068970.1 Reference ASM1680809v1 Primary Assembly

    Range
    10604231..10606966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017556705.2 → XP_017412194.1  uncharacterized protein LOC108323892 isoform X1

    UniProtKB/TrEMBL
    A0A0L9TS97, A0A0S3R6Y4
    Conserved Domains (1) summary
    pfam04724
    Location:19 → 368
    Glyco_transf_17; Glycosyltransferase family 17

  2. XM_052878545.1 → XP_052734505.1  uncharacterized protein LOC108323892 isoform X1

    UniProtKB/TrEMBL
    A0A0L9TS97, A0A0S3R6Y4

  3. XM_052878548.1 → XP_052734508.1  uncharacterized protein LOC108323892 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases