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LOC108322476 uncharacterized LOC108322476 [ Vigna angularis (adzuki bean) ]

Gene ID: 108322476, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108322476
Gene description
uncharacterized LOC108322476
Locus tag
HKW66_Vig0173680
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108322476 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 10 NC_068979.1 (23765983..23771318, complement)
100 previous assembly Vigan1.1 (GCF_001190045.1) Unplaced Scaffold NW_016115094.1 (88327..93945)

Chromosome 10 - NC_068979.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108322488 Neighboring gene binding partner of ACD11 1 Neighboring gene homeobox-leucine zipper protein ATHB-13 Neighboring gene transcription factor PRE6 Neighboring gene secreted RxLR effector protein 161-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of UDP-N-acetylglucosamine transferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC108322476

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068979.1 Reference ASM1680809v1 Primary Assembly

    Range
    23765983..23771318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052869182.1 → XP_052725142.1  uncharacterized protein LOC108322476 isoform X1

    UniProtKB/TrEMBL
    A0A0S3T2Z4, A0A8T0JQB0

  2. XM_017554583.2 → XP_017410072.1  uncharacterized protein LOC108322476 isoform X1

    UniProtKB/TrEMBL
    A0A0S3T2Z4, A0A8T0JQB0
    Conserved Domains (1) summary
    pfam08660
    Location:53 → 232
    Alg14; Oligosaccharide biosynthesis protein Alg14 like

  3. XM_052869183.1 → XP_052725143.1  uncharacterized protein LOC108322476 isoform X2

  4. XM_017554582.2 → XP_017410071.1  uncharacterized protein LOC108322476 isoform X1

    UniProtKB/TrEMBL
    A0A0S3T2Z4, A0A8T0JQB0
    Conserved Domains (1) summary
    pfam08660
    Location:53 → 232
    Alg14; Oligosaccharide biosynthesis protein Alg14 like

  5. XM_017554587.2 → XP_017410076.1  uncharacterized protein LOC108322476 isoform X2

  6. XM_052869181.1 → XP_052725141.1  uncharacterized protein LOC108322476 isoform X1

    UniProtKB/TrEMBL
    A0A0S3T2Z4, A0A8T0JQB0

  7. XM_052869184.1 → XP_052725144.1  uncharacterized protein LOC108322476 isoform X2

  8. XM_017554581.2 → XP_017410070.1  uncharacterized protein LOC108322476 isoform X1

    UniProtKB/TrEMBL
    A0A0S3T2Z4, A0A8T0JQB0
    Conserved Domains (1) summary
    pfam08660
    Location:53 → 232
    Alg14; Oligosaccharide biosynthesis protein Alg14 like

  9. XM_052869185.1 → XP_052725145.1  uncharacterized protein LOC108322476 isoform X2

  10. XM_017554584.2 → XP_017410073.1  uncharacterized protein LOC108322476 isoform X1

    UniProtKB/TrEMBL
    A0A0S3T2Z4, A0A8T0JQB0
    Conserved Domains (1) summary
    pfam08660
    Location:53 → 232
    Alg14; Oligosaccharide biosynthesis protein Alg14 like
Nucleotide Protein
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