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LOC108322318 hydroxyproline O-galactosyltransferase GALT3 [ Vigna angularis (adzuki bean) ]

Gene ID: 108322318, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108322318
Gene description
hydroxyproline O-galactosyltransferase GALT3
Locus tag
HKW66_Vig0021630
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108322318 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 1 NC_068970.1 (3412316..3418251)
100 previous assembly Vigan1.1 (GCF_001190045.1) 1 NC_030637.1 (38197644..38203555, complement)

Chromosome 1 - NC_068970.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase UPL6 Neighboring gene 30S ribosomal protein S1, chloroplastic Neighboring gene probable protein phosphatase 2C 13 Neighboring gene leghemoglobin reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068970.1 Reference ASM1680809v1 Primary Assembly

    Range
    3412316..3418251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017554391.2 → XP_017409880.1  hydroxyproline O-galactosyltransferase GALT3 isoform X2

    UniProtKB/TrEMBL
    A0A8T0L711
    Conserved Domains (1) summary
    PLN03133
    Location:1 → 638
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  2. XM_017554406.2 → XP_017409895.1  hydroxyproline O-galactosyltransferase GALT3 isoform X3

  3. XM_017554374.2 → XP_017409863.1  hydroxyproline O-galactosyltransferase GALT3 isoform X1

    UniProtKB/TrEMBL
    A0A0S3R8U0
    Conserved Domains (3) summary
    PLN03133
    Location:23 → 660
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    pfam00337
    Location:195 → 374
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:427 → 605
    Galactosyl_T; Galactosyltransferase

  4. XM_017554383.2 → XP_017409872.1  hydroxyproline O-galactosyltransferase GALT3 isoform X2

    UniProtKB/TrEMBL
    A0A8T0L711
    Conserved Domains (1) summary
    PLN03133
    Location:1 → 638
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  5. XM_017554400.2 → XP_017409889.1  hydroxyproline O-galactosyltransferase GALT3 isoform X2

    UniProtKB/TrEMBL
    A0A8T0L711
    Conserved Domains (1) summary
    PLN03133
    Location:1 → 638
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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