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LOC108321449 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [ Vigna angularis (adzuki bean) ]

Gene ID: 108321449, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108321449
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
Locus tag
HKW66_Vig0000680
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108321449 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 1 NC_068970.1 (33740509..33745485)
100 previous assembly Vigan1.1 (GCF_001190045.1) Unplaced Scaffold NW_016115030.1 (1835925..1840988, complement)

Chromosome 1 - NC_068970.1Genomic Context describing neighboring genes Neighboring gene potassium transporter 6 Neighboring gene uncharacterized LOC108321407 Neighboring gene uncharacterized LOC108321406 Neighboring gene uncharacterized LOC108321372

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068970.1 Reference ASM1680809v1 Primary Assembly

    Range
    33740509..33745485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017553199.2 → XP_017408688.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    UniProtKB/TrEMBL
    A0A0L9TCL1, A0A0S3R237
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 841
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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