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LOC108321131 cellulose synthase A catalytic subunit 4 [UDP-forming] [ Vigna angularis (adzuki bean) ]

Gene ID: 108321131, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108321131
Gene description
cellulose synthase A catalytic subunit 4 [UDP-forming]
Locus tag
HKW66_Vig0090170
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108321131 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 4 NC_068973.1 (1751799..1757518)
100 previous assembly Vigan1.1 (GCF_001190045.1) Unplaced Scaffold NW_016115005.1 (333094..338918, complement)

Chromosome 4 - NC_068973.1Genomic Context describing neighboring genes Neighboring gene allantoate deiminase 2 Neighboring gene polygalacturonase QRT3 Neighboring gene uncharacterized LOC128196314 Neighboring gene RING-H2 finger protein ATL73

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 4 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068973.1 Reference ASM1680809v1 Primary Assembly

    Range
    1751799..1757518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017552784.2 → XP_017408273.1  cellulose synthase A catalytic subunit 4 [UDP-forming]

    UniProtKB/TrEMBL
    A0A0L9TBT6, A0A0S3RHU4, A0A8T0KHQ1
    Conserved Domains (3) summary
    PLN02915
    Location:20 → 1048
    PLN02915; cellulose synthase A [UDP-forming], catalytic subunit
    pfam14569
    Location:29 → 94
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:473 → 799
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases