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LOC108320886 cellulose synthase-like protein D2 [ Vigna angularis (adzuki bean) ]

Gene ID: 108320886, updated on 10-Oct-2024

Summary

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Gene symbol
LOC108320886
Gene description
cellulose synthase-like protein D2
Locus tag
HKW66_Vig0163180
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108320886 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 10 NC_068979.1 (1083967..1088947)
100 previous assembly Vigan1.1 (GCF_001190045.1) Unplaced Scaffold NW_016114995.1 (415912..420886)

Chromosome 10 - NC_068979.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108320909 Neighboring gene TOM1-like protein 1 Neighboring gene heat shock 70 kDa protein 8-like Neighboring gene putative F-box protein At4g22170

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068979.1 Reference ASM1680809v1 Primary Assembly

    Range
    1083967..1088947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017552468.2 → XP_017407957.2  cellulose synthase-like protein D2

    UniProtKB/TrEMBL
    A0A8T0JHU1

  2. XM_052869354.1 → XP_052725314.1  cellulose synthase-like protein D2

    UniProtKB/TrEMBL
    A0A8T0JHU1

  3. XM_052869353.1 → XP_052725313.1  cellulose synthase-like protein D2

    UniProtKB/TrEMBL
    A0A8T0JHU1

  4. XM_017552469.2 → XP_017407958.2  cellulose synthase-like protein D2

    UniProtKB/TrEMBL
    A0A8T0JHU1
Nucleotide Protein
Heading Accession and Version

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