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OLR1 oxidized low density lipoprotein receptor 1 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108315804, updated on 14-Mar-2024

Summary

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Gene symbol
OLR1
Gene description
oxidized low density lipoprotein receptor 1
See related
Ensembl:ENSCCAG00000018841
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See OLR1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107494.1 (1019930..1034442)

NW_016107494.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119473708 Neighboring gene transmembrane protein 52B Neighboring gene C-type lectin domain containing 7A Neighboring gene heterogeneous nuclear ribonucleoprotein A/B-like Neighboring gene C-type lectin domain family 1 member A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107494 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables low-density lipoprotein particle receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell death IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxidized low-density lipoprotein receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107494.1 Reference Cebus_imitator-1.0

    Range
    1019930..1034442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017545362.2 → XP_017400851.1  oxidized low-density lipoprotein receptor 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5PJE3
    Related
    ENSCCAP00000003736.1, ENSCCAT00000020431.1
    Conserved Domains (2) summary
    cd03593
    Location:144 → 266
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    cd16172
    Location:53 → 139
    TorS_sensor_domain; sensor domain of the sensor histidine kinase TorS

  2. XM_017545363.2 → XP_017400852.1  oxidized low-density lipoprotein receptor 1 isoform X2

    Conserved Domains (2) summary
    cd16172
    Location:53 → 139
    TorS_sensor_domain; sensor domain of the sensor histidine kinase TorS
    cl02432
    Location:144 → 201
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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