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DDX55 DEAD-box helicase 55 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108315193, updated on 14-Mar-2024

Summary

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Gene symbol
DDX55
Gene description
DEAD-box helicase 55
See related
Ensembl:ENSCCAG00000021652
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See DDX55 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107484.1 (2565893..2583537)

NW_016107484.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108315192 Neighboring gene transmembrane p24 trafficking protein 2 Neighboring gene small nucleolar RNA SNORA9 Neighboring gene eukaryotic translation initiation factor 2B subunit alpha Neighboring gene general transcription factor IIH subunit 3 Neighboring gene tectonic family member 2 Neighboring gene ATPase H+ transporting V0 subunit a2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107484 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107484.1 Reference Cebus_imitator-1.0

    Range
    2565893..2583537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017544397.2 → XP_017399886.1  ATP-dependent RNA helicase DDX55 isoform X1

    UniProtKB/TrEMBL
    A0A2K5PVY9, A0A2K5PW38
    Related
    ENSCCAP00000007801.1, ENSCCAT00000025177.1

  2. XM_017544398.2 → XP_017399887.1  ATP-dependent RNA helicase DDX55 isoform X2

    UniProtKB/TrEMBL
    A0A2K5PVY9

  3. XM_037744251.1 → XP_037600179.1  ATP-dependent RNA helicase DDX55 isoform X3

    UniProtKB/TrEMBL
    A0A2K5PVY9
    Conserved Domains (2) summary
    COG0513
    Location:2 → 331
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    pfam13959
    Location:359 → 416
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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