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SPHK1 sphingosine kinase 1 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108309464, updated on 14-Mar-2024

Summary

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Gene symbol
SPHK1
Gene description
sphingosine kinase 1
See related
Ensembl:ENSCCAG00000020534
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See SPHK1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107408.1 (6545898..6549162)

NW_016107408.1Genomic Context describing neighboring genes Neighboring gene phosphoribosyl pyrophosphate synthetase associated protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene methyltransferase N6AMT1-like Neighboring gene ubiquitin conjugating enzyme E2 O Neighboring gene aralkylamine N-acetyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107408 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107408.1 Reference Cebus_imitator-1.0

    Range
    6545898..6549162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037741064.1 → XP_037596992.1  sphingosine kinase 1 isoform X2

    Conserved Domains (1) summary
    PLN02958
    Location:80 → 414
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  2. XM_017535834.2 → XP_017391323.1  sphingosine kinase 1 isoform X2

    Conserved Domains (1) summary
    PLN02958
    Location:80 → 414
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  3. XM_037741065.1 → XP_037596993.1  sphingosine kinase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5PPL1
    Related
    ENSCCAP00000005574.1, ENSCCAT00000022915.1
    Conserved Domains (1) summary
    PLN02958
    Location:11 → 345
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  4. XM_017535835.2 → XP_017391324.1  sphingosine kinase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5PPL1
    Related
    ENSCCAP00000005564.1, ENSCCAT00000022905.1
    Conserved Domains (1) summary
    PLN02958
    Location:11 → 345
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  5. XM_017535833.2 → XP_017391322.1  sphingosine kinase 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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