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PLA2G4B phospholipase A2 group IVB [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108306197, updated on 14-Mar-2024

Summary

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Gene symbol
PLA2G4B
Gene description
phospholipase A2 group IVB
See related
Ensembl:ENSCCAG00000022098
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See PLA2G4B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107385.1 (4337634..4347949)

NW_016107385.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase binding protein 1 Neighboring gene jumonji domain containing 7 Neighboring gene spectrin beta, non-erythrocytic 5 Neighboring gene uncharacterized LOC119471705 Neighboring gene uncharacterized LOC108306202

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107385 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic phospholipase A2 beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107385.1 Reference Cebus_imitator-1.0

    Range
    4337634..4347949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037739458.1 → XP_037595386.1  cytosolic phospholipase A2 beta isoform X1

    Conserved Domains (3) summary
    cd04036
    Location:11 → 130
    C2_cPLA2; C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)
    pfam18695
    Location:151 → 243
    cPLA2_C2; Cytosolic phospholipases A2 C2-domain
    cl11396
    Location:245 → 776
    Patatin_and_cPLA2; Patatins and Phospholipases

  2. XM_037739460.1 → XP_037595388.1  cytosolic phospholipase A2 beta isoform X3

    Conserved Domains (3) summary
    cd07201
    Location:245 → 770
    cPLA2_Grp-IVB-IVD-IVE-IVF; Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent
    cd04036
    Location:11 → 130
    C2_cPLA2; C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)
    pfam18695
    Location:151 → 243
    cPLA2_C2; Cytosolic phospholipases A2 C2-domain

  3. XM_037739459.1 → XP_037595387.1  cytosolic phospholipase A2 beta isoform X2

    Conserved Domains (3) summary
    cd04036
    Location:11 → 130
    C2_cPLA2; C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)
    pfam18695
    Location:151 → 241
    cPLA2_C2; Cytosolic phospholipases A2 C2-domain
    cl11396
    Location:243 → 774
    Patatin_and_cPLA2; Patatins and Phospholipases

  4. XM_017531032.2 → XP_017386521.1  cytosolic phospholipase A2 beta isoform X5

  5. XM_017531033.2 → XP_017386522.1  cytosolic phospholipase A2 beta isoform X6

  6. XM_017531031.2 → XP_017386520.1  cytosolic phospholipase A2 beta isoform X4

    UniProtKB/TrEMBL
    A0A2K5PYH2
    Related
    ENSCCAP00000008695.1, ENSCCAT00000026075.1
Nucleotide Protein
Heading Accession and Version

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