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PRPF18 pre-mRNA processing factor 18 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108305257, updated on 14-Mar-2024

Summary

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Gene symbol
PRPF18
Gene description
pre-mRNA processing factor 18
See related
Ensembl:ENSCCAG00000036822
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See PRPF18 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107376.1 (6408585..6451665, complement)

NW_016107376.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 4A Neighboring gene uncharacterized LOC108305259 Neighboring gene uncharacterized LOC108305258 Neighboring gene uncharacterized LOC108305193 Neighboring gene BEN domain containing 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107376 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107376.1 Reference Cebus_imitator-1.0

    Range
    6408585..6451665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017529834.2 → XP_017385323.1  pre-mRNA-splicing factor 18 isoform X2

    UniProtKB/TrEMBL
    A0A2K5SC29, A0A2K5SC83
    Related
    ENSCCAP00000037959.1, ENSCCAT00000055751.1
    Conserved Domains (2) summary
    smart00500
    Location:79 → 122
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:191 → 327
    Prp18; Prp18 domain

  2. XM_017529835.2 → XP_017385324.1  pre-mRNA-splicing factor 18 isoform X3

    UniProtKB/TrEMBL
    A0A2K5SC83
    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:178 → 313
    Prp18; Prp18 domain

  3. XM_017529833.2 → XP_017385322.1  pre-mRNA-splicing factor 18 isoform X1

    UniProtKB/TrEMBL
    A0A2K5SC53, A0A2K5SC83
    Related
    ENSCCAP00000037962.1, ENSCCAT00000055754.1
    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 336
    Prp18; Prp18 domain
Nucleotide Protein
Heading Accession and Version

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