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GPNMB glycoprotein nmb [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108303213, updated on 14-Mar-2024

Summary

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Gene symbol
GPNMB
Gene description
glycoprotein nmb
See related
Ensembl:ENSCCAG00000024985
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See GPNMB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107360.1 (7600589..7628769)

NW_016107360.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 7 Neighboring gene U6 spliceosomal RNA Neighboring gene nucleoporin 42 Neighboring gene mitochondrial assembly of ribosomal large subunit 1 Neighboring gene insulin like growth factor 2 mRNA binding protein 3 Neighboring gene condensin complex subunit 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107360 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane glycoprotein NMB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107360.1 Reference Cebus_imitator-1.0

    Range
    7600589..7628769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017526985.2 → XP_017382474.2  transmembrane glycoprotein NMB

    UniProtKB/TrEMBL
    A0A2K5QEN9
    Related
    ENSCCAP00000014357.1, ENSCCAT00000031795.1
    Conserved Domains (1) summary
    cd00146
    Location:245 → 308
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
Nucleotide Protein
Heading Accession and Version

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