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ATXN2L ataxin 2 like [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108302204, updated on 14-Mar-2024

Summary

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Gene symbol
ATXN2L
Gene description
ataxin 2 like
See related
Ensembl:ENSCCAG00000033928
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See ATXN2L in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107354.1 (11409..25808)

NW_016107354.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119470744 Neighboring gene Tu translation elongation factor, mitochondrial Neighboring gene SH2B adaptor protein 1 Neighboring gene 60S ribosomal protein L35-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107354 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107354.1 Reference Cebus_imitator-1.0

    Range
    11409..25808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017525662.2 → XP_017381151.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    A0A2K5RUU1

  2. XM_017525661.2 → XP_017381150.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    A0A2K5RUU1

  3. XM_017525660.2 → XP_017381149.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    A0A2K5RUU1

  4. XM_017525672.2 → XP_017381161.1  ataxin-2-like protein isoform X7

    UniProtKB/TrEMBL
    A0A2K5RUU1
    Related
    ENSCCAP00000031895.1, ENSCCAT00000049650.1

  5. XM_017525669.2 → XP_017381158.1  ataxin-2-like protein isoform X5

    UniProtKB/TrEMBL
    A0A2K5RUU1, A0A2K5RUW8
    Related
    ENSCCAP00000031938.1, ENSCCAT00000049693.1

  6. XM_017525671.2 → XP_017381160.1  ataxin-2-like protein isoform X6

    UniProtKB/TrEMBL
    A0A2K5RUU1

  7. XM_017525664.2 → XP_017381153.1  ataxin-2-like protein isoform X3

    UniProtKB/TrEMBL
    A0A2K5RUU1

  8. XM_017525676.2 → XP_017381165.1  ataxin-2-like protein isoform X7

    UniProtKB/TrEMBL
    A0A2K5RUU1

  9. XM_017525663.2 → XP_017381152.1  ataxin-2-like protein isoform X2

    UniProtKB/TrEMBL
    A0A2K5RUU1, A0A2K5RUW3
    Related
    ENSCCAP00000031920.1, ENSCCAT00000049675.1
    Conserved Domains (4) summary
    COG5180
    Location:209 → 744
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:661 → 941
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:264 → 326
    LsmAD; LsmAD domain
    pfam14438
    Location:123 → 196
    SM-ATX; Ataxin 2 SM domain

  10. XM_017525673.2 → XP_017381162.1  ataxin-2-like protein isoform X8

    UniProtKB/TrEMBL
    A0A2K5RUU1

  11. XM_017525674.2 → XP_017381163.1  ataxin-2-like protein isoform X9

    UniProtKB/TrEMBL
    A0A2K5RUU1

  12. XM_017525681.2 → XP_017381170.1  ataxin-2-like protein isoform X13

    UniProtKB/TrEMBL
    A0A2K5RUU1

  13. XM_017525678.2 → XP_017381167.1  ataxin-2-like protein isoform X10

    UniProtKB/TrEMBL
    A0A2K5RUU1

  14. XM_017525679.2 → XP_017381168.1  ataxin-2-like protein isoform X11

    UniProtKB/TrEMBL
    A0A2K5RUU1

  15. XM_037737457.1 → XP_037593385.1  ataxin-2-like protein isoform X2

    UniProtKB/TrEMBL
    A0A2K5RUU1, A0A2K5RUW3
    Conserved Domains (4) summary
    COG5180
    Location:209 → 744
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:661 → 941
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:264 → 326
    LsmAD; LsmAD domain
    pfam14438
    Location:123 → 196
    SM-ATX; Ataxin 2 SM domain

  16. XM_037737458.1 → XP_037593386.1  ataxin-2-like protein isoform X4

    UniProtKB/TrEMBL
    A0A2K5RUU1
    Conserved Domains (4) summary
    COG5180
    Location:209 → 744
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:661 → 941
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:264 → 326
    LsmAD; LsmAD domain
    pfam14438
    Location:123 → 196
    SM-ATX; Ataxin 2 SM domain

  17. XM_037737460.1 → XP_037593388.1  ataxin-2-like protein isoform X16

    UniProtKB/TrEMBL
    A0A2K5RUU1
    Conserved Domains (3) summary
    PHA03247
    Location:398 → 942
    PHA03247; large tegument protein UL36; Provisional
    pfam06741
    Location:264 → 326
    LsmAD; LsmAD domain
    pfam14438
    Location:123 → 196
    SM-ATX; Ataxin 2 SM domain

  18. XM_017525682.2 → XP_017381171.1  ataxin-2-like protein isoform X14

    UniProtKB/TrEMBL
    A0A2K5RUU1

  19. XM_017525683.2 → XP_017381172.1  ataxin-2-like protein isoform X15

    UniProtKB/TrEMBL
    A0A2K5RUU1

  20. XM_037737461.1 → XP_037593389.1  ataxin-2-like protein isoform X17

    UniProtKB/TrEMBL
    A0A2K5RUU1
    Conserved Domains (3) summary
    PHA03247
    Location:398 → 989
    PHA03247; large tegument protein UL36; Provisional
    pfam06741
    Location:264 → 326
    LsmAD; LsmAD domain
    pfam14438
    Location:123 → 196
    SM-ATX; Ataxin 2 SM domain

  21. XM_017525684.2 → XP_017381173.1  ataxin-2-like protein isoform X13

    UniProtKB/TrEMBL
    A0A2K5RUU1

  22. XM_017525685.2 → XP_017381174.1  ataxin-2-like protein isoform X13

    UniProtKB/TrEMBL
    A0A2K5RUU1

  23. XM_017525680.2 → XP_017381169.1  ataxin-2-like protein isoform X12

    UniProtKB/TrEMBL
    A0A2K5RUZ2
    Related
    ENSCCAP00000031950.1, ENSCCAT00000049705.1
Nucleotide Protein
Heading Accession and Version

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