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DYSF dysferlin [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108299616, updated on 14-Mar-2024

Summary

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Gene symbol
DYSF
Gene description
dysferlin
See related
Ensembl:ENSCCAG00000021995
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See DYSF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
61
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107338.1 (2108735..2340593, complement)

NW_016107338.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108299614 Neighboring gene uncharacterized LOC119470137 Neighboring gene small integral membrane protein 30-like Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 638 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107338 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107338.1 Reference Cebus_imitator-1.0

    Range
    2108735..2340593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037736130.1 → XP_037592058.1  dysferlin isoform X2

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (11) summary
    cd04011
    Location:250 → 359
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1185 → 1313
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:413 → 587
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1659 → 1782
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 131
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1893 → 2024
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:979 → 1035
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:819 → 892
    FerB; FerB (NUC096) domain
    pfam08151
    Location:357 → 407
    FerI; FerI (NUC094) domain
    pfam08165
    Location:731 → 788
    FerA; FerA (NUC095) domain
    pfam16165
    Location:2037 → 2125
    Ferlin_C; Ferlin C-terminus

  2. XM_037736135.1 → XP_037592063.1  dysferlin isoform X13

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (12) summary
    cd04011
    Location:219 → 328
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1154 → 1282
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:382 → 556
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1614 → 1737
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 131
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1848 → 1979
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:948 → 1004
    DysFN; Dysferlin domain, N-terminal region
    COG5038
    Location:1175 → 1435
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    pfam08150
    Location:788 → 861
    FerB; FerB (NUC096) domain
    pfam08151
    Location:326 → 376
    FerI; FerI (NUC094) domain
    pfam08165
    Location:700 → 757
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1992 → 2080
    Ferlin_C; Ferlin C-terminus

  3. XM_037736134.1 → XP_037592062.1  dysferlin isoform X9

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (11) summary
    cd04011
    Location:219 → 328
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1154 → 1282
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:382 → 556
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1628 → 1751
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 131
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1862 → 1993
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:948 → 1004
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:788 → 861
    FerB; FerB (NUC096) domain
    pfam08151
    Location:326 → 376
    FerI; FerI (NUC094) domain
    pfam08165
    Location:700 → 757
    FerA; FerA (NUC095) domain
    pfam16165
    Location:2006 → 2094
    Ferlin_C; Ferlin C-terminus

  4. XM_017521989.2 → XP_017377478.1  dysferlin isoform X25

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  5. XM_017521985.2 → XP_017377474.1  dysferlin isoform X21

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  6. XM_017521987.2 → XP_017377476.1  dysferlin isoform X23

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  7. XM_017521980.2 → XP_017377469.1  dysferlin isoform X17

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  8. XM_017521983.2 → XP_017377472.1  dysferlin isoform X19

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  9. XM_017521976.2 → XP_017377465.1  dysferlin isoform X12

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  10. XM_017521978.2 → XP_017377467.1  dysferlin isoform X15

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  11. XM_037736133.1 → XP_037592061.1  dysferlin isoform X8

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (11) summary
    cd04011
    Location:220 → 329
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1155 → 1283
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:383 → 557
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1629 → 1752
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 132
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1863 → 1994
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:949 → 1005
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:789 → 862
    FerB; FerB (NUC096) domain
    pfam08151
    Location:327 → 377
    FerI; FerI (NUC094) domain
    pfam08165
    Location:701 → 758
    FerA; FerA (NUC095) domain
    pfam16165
    Location:2007 → 2095
    Ferlin_C; Ferlin C-terminus

  12. XM_037736132.1 → XP_037592060.1  dysferlin isoform X6

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (11) summary
    cd04011
    Location:251 → 360
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1172 → 1300
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:414 → 574
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1646 → 1769
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 132
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1880 → 2011
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:966 → 1022
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:806 → 879
    FerB; FerB (NUC096) domain
    pfam08151
    Location:358 → 408
    FerI; FerI (NUC094) domain
    pfam08165
    Location:718 → 775
    FerA; FerA (NUC095) domain
    pfam16165
    Location:2024 → 2112
    Ferlin_C; Ferlin C-terminus

  13. XM_017521969.2 → XP_017377458.1  dysferlin isoform X7

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  14. XM_037736131.1 → XP_037592059.1  dysferlin isoform X5

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (12) summary
    cd04011
    Location:251 → 360
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1186 → 1314
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:414 → 588
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1646 → 1769
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 132
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1880 → 2011
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:980 → 1036
    DysFN; Dysferlin domain, N-terminal region
    COG5038
    Location:1207 → 1467
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    pfam08150
    Location:820 → 893
    FerB; FerB (NUC096) domain
    pfam08151
    Location:358 → 408
    FerI; FerI (NUC094) domain
    pfam08165
    Location:732 → 789
    FerA; FerA (NUC095) domain
    pfam16165
    Location:2024 → 2112
    Ferlin_C; Ferlin C-terminus

  15. XM_037736136.1 → XP_037592064.1  dysferlin isoform X26

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (12) summary
    cd04011
    Location:251 → 360
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1186 → 1314
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:414 → 588
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1546 → 1669
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 132
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1780 → 1911
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:980 → 1036
    DysFN; Dysferlin domain, N-terminal region
    COG5038
    Location:1207 → 1650
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    pfam08150
    Location:820 → 893
    FerB; FerB (NUC096) domain
    pfam08151
    Location:358 → 408
    FerI; FerI (NUC094) domain
    pfam08165
    Location:732 → 789
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1924 → 2012
    Ferlin_C; Ferlin C-terminus

  16. XM_017521970.2 → XP_017377459.1  dysferlin isoform X10

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  17. XM_017521966.2 → XP_017377455.1  dysferlin isoform X4

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  18. XM_017521963.2 → XP_017377452.1  dysferlin isoform X3

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  19. XM_037736129.1 → XP_037592057.1  dysferlin isoform X1

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (11) summary
    cd04011
    Location:251 → 360
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1186 → 1314
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:414 → 588
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1660 → 1783
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 132
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1894 → 2025
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:980 → 1036
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:820 → 893
    FerB; FerB (NUC096) domain
    pfam08151
    Location:358 → 408
    FerI; FerI (NUC094) domain
    pfam08165
    Location:732 → 789
    FerA; FerA (NUC095) domain
    pfam16165
    Location:2038 → 2126
    Ferlin_C; Ferlin C-terminus

  20. XM_017521988.2 → XP_017377477.1  dysferlin isoform X24

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  21. XM_017521984.2 → XP_017377473.1  dysferlin isoform X20

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  22. XM_017521986.2 → XP_017377475.1  dysferlin isoform X22

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  23. XM_017521979.2 → XP_017377468.1  dysferlin isoform X16

    UniProtKB/TrEMBL
    A0A2K5Q0C9, A0A2K5Q0E7
    Related
    ENSCCAP00000009332.1, ENSCCAT00000026716.1

  24. XM_017521981.2 → XP_017377470.1  dysferlin isoform X18

    UniProtKB/TrEMBL
    A0A2K5Q0E7

  25. XM_017521973.2 → XP_017377462.1  dysferlin isoform X11

    UniProtKB/TrEMBL
    A0A2K5Q0C7, A0A2K5Q0E7
    Related
    ENSCCAP00000009326.1, ENSCCAT00000026710.1

  26. XM_017521977.2 → XP_017377466.1  dysferlin isoform X14

    UniProtKB/TrEMBL
    A0A2K5Q0A2, A0A2K5Q0E7
    Related
    ENSCCAP00000009307.1, ENSCCAT00000026691.1

  27. XM_037736137.1 → XP_037592065.1  dysferlin isoform X27

    UniProtKB/TrEMBL
    A0A2K5Q0E7
    Conserved Domains (9) summary
    cd04011
    Location:251 → 360
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1186 → 1314
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:414 → 588
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1660 → 1783
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 132
    C2A_Ferlin; C2 domain first repeat in Ferlin
    smart00693
    Location:980 → 1036
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:820 → 893
    FerB; FerB (NUC096) domain
    pfam08151
    Location:358 → 408
    FerI; FerI (NUC094) domain
    pfam08165
    Location:732 → 789
    FerA; FerA (NUC095) domain
Nucleotide Protein
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