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EDC3 enhancer of mRNA decapping 3 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108298443, updated on 14-Mar-2024

Summary

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Gene symbol
EDC3
Gene description
enhancer of mRNA decapping 3
See related
Ensembl:ENSCCAG00000021663
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See EDC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016108277.1 (42407..105676)

NW_016108277.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 1 subfamily A member 1 Neighboring gene CDC like kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016108277 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
enhancer of mRNA-decapping protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016108277.1 Reference Cebus_imitator-1.0

    Range
    42407..105676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017521118.2 → XP_017376607.1  enhancer of mRNA-decapping protein 3

    UniProtKB/TrEMBL
    A0A2K5PW07
    Related
    ENSCCAP00000007855.1, ENSCCAT00000025232.1
    Conserved Domains (4) summary
    cd01737
    Location:2 → 66
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam09532
    Location:199 → 300
    FDF; FDF domain
    pfam03853
    Location:302 → 455
    YjeF_N; YjeF-related protein N-terminus
    pfam16598
    Location:102 → 197
    Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3

  2. XM_017521117.2 → XP_017376606.1  enhancer of mRNA-decapping protein 3

    UniProtKB/TrEMBL
    A0A2K5PW07
    Related
    ENSCCAP00000007845.1, ENSCCAT00000025221.1
    Conserved Domains (4) summary
    cd01737
    Location:2 → 66
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam09532
    Location:199 → 300
    FDF; FDF domain
    pfam03853
    Location:302 → 455
    YjeF_N; YjeF-related protein N-terminus
    pfam16598
    Location:102 → 197
    Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3
Nucleotide Protein
Heading Accession and Version

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