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NUP88 nucleoporin 88 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108297769, updated on 14-Mar-2024

Summary

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Gene symbol
NUP88
Gene description
nucleoporin 88
See related
Ensembl:ENSCCAG00000025459
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See NUP88 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016108156.1 (256404..289159)

NW_016108156.1Genomic Context describing neighboring genes Neighboring gene DEAH-box helicase 33 Neighboring gene complement C1q binding protein Neighboring gene RPA interacting protein Neighboring gene rab GTPase-binding effector protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016108156 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex protein Nup88

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016108156.1 Reference Cebus_imitator-1.0

    Range
    256404..289159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017520474.2 → XP_017375963.1  nuclear pore complex protein Nup88 isoform X2

    UniProtKB/TrEMBL
    A0A2K5QHI6

  2. XM_017520473.2 → XP_017375962.1  nuclear pore complex protein Nup88 isoform X1

    UniProtKB/TrEMBL
    A0A2K5QHI6, A0A2K5QHL0
    Related
    ENSCCAP00000015340.1, ENSCCAT00000032785.1

  3. XM_017520475.2 → XP_017375964.1  nuclear pore complex protein Nup88 isoform X3

    UniProtKB/TrEMBL
    A0A2K5QHI6

  4. XM_037735562.1 → XP_037591490.1  nuclear pore complex protein Nup88 isoform X4

    UniProtKB/TrEMBL
    A0A2K5QHI6
    Conserved Domains (1) summary
    pfam10168
    Location:2 → 595
    Nup88; Nuclear pore component
Nucleotide Protein
Heading Accession and Version

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