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DHX30 DExH-box helicase 30 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108295579, updated on 14-Mar-2024

Summary

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Gene symbol
DHX30
Gene description
DExH-box helicase 30
See related
Ensembl:ENSCCAG00000032718
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See DHX30 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107315.1 (6298665..6360223, complement)

NW_016107315.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily B member 6 Neighboring gene microtubule associated protein 4 Neighboring gene vacuolar protein sorting-associated protein 26A-like Neighboring gene malignant T-cell-amplified sequence 1-like Neighboring gene 60S ribosomal protein L8-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107315 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DHX30
Names
DEAH-box helicase 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107315.1 Reference Cebus_imitator-1.0

    Range
    6298665..6360223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017518063.2 → XP_017373552.1  ATP-dependent RNA helicase DHX30 isoform X4

    UniProtKB/TrEMBL
    A0A2K5RNG8
    Conserved Domains (1) summary
    COG1643
    Location:391 → 1040
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_037729375.1 → XP_037585303.1  ATP-dependent RNA helicase DHX30 isoform X3

    UniProtKB/TrEMBL
    A0A2K5RNC0, A0A2K5RNL4
    Related
    ENSCCAP00000029647.1, ENSCCAT00000047384.1
    Conserved Domains (1) summary
    COG1643
    Location:384 → 1033
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  3. XM_017518008.2 → XP_017373497.1  ATP-dependent RNA helicase DHX30 isoform X2

    UniProtKB/TrEMBL
    A0A2K5RNG8, A0A2K5RNI5
    Conserved Domains (1) summary
    COG1643
    Location:423 → 1072
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  4. XM_017518140.2 → XP_017373629.1  ATP-dependent RNA helicase DHX30 isoform X3

    UniProtKB/TrEMBL
    A0A2K5RNC0, A0A2K5RNL4
    Conserved Domains (1) summary
    COG1643
    Location:384 → 1033
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  5. XM_037729358.1 → XP_037585286.1  ATP-dependent RNA helicase DHX30 isoform X2

    UniProtKB/TrEMBL
    A0A2K5RNG8, A0A2K5RNI5
    Related
    ENSCCAP00000029674.1, ENSCCAT00000047411.1
    Conserved Domains (1) summary
    COG1643
    Location:423 → 1072
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  6. XM_037729416.1 → XP_037585344.1  ATP-dependent RNA helicase DHX30 isoform X5

    UniProtKB/TrEMBL
    A0A2K5RNG8
    Related
    ENSCCAP00000029692.1, ENSCCAT00000047429.1
    Conserved Domains (1) summary
    COG1643
    Location:385 → 1034
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  7. XM_017517905.1 → XP_017373394.1  ATP-dependent RNA helicase DHX30 isoform X1

    UniProtKB/TrEMBL
    A0A2K5RNE0, A0A2K5RNG8
    Related
    ENSCCAP00000029660.1, ENSCCAT00000047397.1
Nucleotide Protein
Heading Accession and Version

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