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PLEC plectin [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108291304, updated on 14-Mar-2024

Summary

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Gene symbol
PLEC
Gene description
plectin
See related
Ensembl:ENSCCAG00000031237
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See PLEC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107764.1 (2613209..2673824, complement)

NW_016107764.1Genomic Context describing neighboring genes Neighboring gene epiplakin 1 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene poly(ADP-ribose) polymerase family member 10 Neighboring gene glutamate ionotropic receptor NMDA type subunit associated protein 1 Neighboring gene spermatogenesis and centriole associated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107764 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107764.1 Reference Cebus_imitator-1.0

    Range
    2613209..2673824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017511595.2 → XP_017367084.1  plectin isoform X7

  2. XM_017511608.2 → XP_017367097.1  plectin isoform X18

  3. XM_017511606.2 → XP_017367095.1  plectin isoform X16

  4. XM_017511593.2 → XP_017367082.2  plectin isoform X24

    Conserved Domains (9) summary
    PTZ00121
    Location:1333 → 2059
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3081 → 3117
    PLEC; Plectin repeat
    COG0419
    Location:1013 → 1587
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:605 → 785
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4028 → 4067
    Plectin; Plectin repeat
    pfam17902
    Location:780 → 846
    SH3_10; SH3 domain
    pfam18373
    Location:881 → 958
    Spectrin_like; Spectrin like domain
    cd21188
    Location:19 → 135
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cd21238
    Location:148 → 253
    CH_PLEC_rpt2; second calponin homology (CH) domain found in plectin and similar proteins

  5. XM_017511592.2 → XP_017367081.2  plectin isoform X21

    Conserved Domains (9) summary
    PTZ00121
    Location:1338 → 2064
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3086 → 3122
    PLEC; Plectin repeat
    COG0419
    Location:1018 → 1592
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:610 → 790
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4033 → 4072
    Plectin; Plectin repeat
    pfam17902
    Location:785 → 851
    SH3_10; SH3 domain
    pfam18373
    Location:886 → 963
    Spectrin_like; Spectrin like domain
    cd21188
    Location:19 → 140
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cd21238
    Location:153 → 258
    CH_PLEC_rpt2; second calponin homology (CH) domain found in plectin and similar proteins

  6. XM_017511586.2 → XP_017367075.1  plectin isoform X3

  7. XM_017511585.2 → XP_017367074.1  plectin isoform X2

  8. XM_017511584.2 → XP_017367073.1  plectin isoform X1

  9. XM_017511611.2 → XP_017367100.1  plectin isoform X22

  10. XM_017511599.2 → XP_017367088.2  plectin isoform X9

    Conserved Domains (9) summary
    PTZ00121
    Location:1323 → 2049
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3071 → 3107
    PLEC; Plectin repeat
    COG0419
    Location:1003 → 1577
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:595 → 775
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4018 → 4057
    Plectin; Plectin repeat
    pfam17902
    Location:770 → 836
    SH3_10; SH3 domain
    pfam18373
    Location:871 → 948
    Spectrin_like; Spectrin like domain
    cd21188
    Location:9 → 125
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cd21238
    Location:138 → 243
    CH_PLEC_rpt2; second calponin homology (CH) domain found in plectin and similar proteins

  11. XM_017511598.2 → XP_017367087.2  plectin isoform X8

    Conserved Domains (9) summary
    PTZ00121
    Location:1328 → 2054
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3076 → 3112
    PLEC; Plectin repeat
    COG0419
    Location:1008 → 1582
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:600 → 780
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4023 → 4062
    Plectin; Plectin repeat
    pfam17902
    Location:775 → 841
    SH3_10; SH3 domain
    pfam18373
    Location:876 → 953
    Spectrin_like; Spectrin like domain
    cd21188
    Location:9 → 130
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cd21238
    Location:143 → 248
    CH_PLEC_rpt2; second calponin homology (CH) domain found in plectin and similar proteins

  12. XM_017511602.2 → XP_017367091.1  plectin isoform X12

  13. XM_017511605.2 → XP_017367094.1  plectin isoform X15

  14. XM_017511588.2 → XP_017367077.1  plectin isoform X28

  15. XM_017511587.2 → XP_017367076.1  plectin isoform X27

  16. XM_017511604.2 → XP_017367093.1  plectin isoform X14

  17. XM_017511601.2 → XP_017367090.1  plectin isoform X11

  18. XM_017511600.2 → XP_017367089.1  plectin isoform X10

    UniProtKB/TrEMBL
    A0A2K5RG08
    Related
    ENSCCAP00000027067.1, ENSCCAT00000044623.1

  19. XM_017511594.2 → XP_017367083.1  plectin isoform X6

  20. XM_017511612.1 → XP_017367101.1  plectin isoform X23

    UniProtKB/TrEMBL
    A0A2K5RG19
    Related
    ENSCCAP00000027077.1, ENSCCAT00000044633.1

  21. XM_017511596.2 → XP_017367085.2  plectin isoform X25

    UniProtKB/TrEMBL
    A0A2K5RG28
    Related
    ENSCCAP00000027087.1, ENSCCAT00000044643.1
    Conserved Domains (9) summary
    PTZ00121
    Location:1321 → 2047
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3069 → 3105
    PLEC; Plectin repeat
    COG0419
    Location:1001 → 1575
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd00176
    Location:593 → 773
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4016 → 4055
    Plectin; Plectin repeat
    pfam17902
    Location:768 → 834
    SH3_10; SH3 domain
    pfam18373
    Location:869 → 946
    Spectrin_like; Spectrin like domain
    cd21188
    Location:19 → 123
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cd21238
    Location:136 → 241
    CH_PLEC_rpt2; second calponin homology (CH) domain found in plectin and similar proteins

  22. XM_017511590.1 → XP_017367079.1  plectin isoform X5

    UniProtKB/TrEMBL
    A0A2K5RG09
    Related
    ENSCCAP00000027096.1, ENSCCAT00000044654.1

  23. XM_017511589.1 → XP_017367078.1  plectin isoform X4

  24. XM_017511614.2 → XP_017367103.1  plectin isoform X26

  25. XM_017511603.2 → XP_017367092.1  plectin isoform X13

    UniProtKB/TrEMBL
    A0A2K5RG69
    Related
    ENSCCAP00000027108.1, ENSCCAT00000044665.1

  26. XM_017511607.2 → XP_017367096.1  plectin isoform X17

  27. XM_017511610.2 → XP_017367099.1  plectin isoform X20

    UniProtKB/TrEMBL
    A0A2K5RG52
    Related
    ENSCCAP00000027114.1, ENSCCAT00000044671.1

  28. XM_017511591.2 → XP_017367080.1  plectin isoform X29

    UniProtKB/TrEMBL
    A0A2K5RG64
    Related
    ENSCCAP00000027124.1, ENSCCAT00000044681.1

  29. XM_017511609.2 → XP_017367098.1  plectin isoform X19

    UniProtKB/TrEMBL
    A0A2K5RGA1
    Related
    ENSCCAP00000027133.1, ENSCCAT00000044690.1
Nucleotide Protein
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