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SDC2 syndecan 2 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108288594, updated on 14-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
Ensembl:ENSCCAG00000028630
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107694.1 (1415018..1529922, complement)

NW_016107694.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108288593 Neighboring gene carboxypeptidase Q Neighboring gene U6 spliceosomal RNA Neighboring gene phosphatidylserine synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107694 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107694.1 Reference Cebus_imitator-1.0

    Range
    1415018..1529922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017507574.2 → XP_017363063.1  syndecan-2 isoform X1

    UniProtKB/TrEMBL
    A0A2K5R0F0, A0A2K5R0H2
    Related
    ENSCCAP00000021605.1, ENSCCAT00000039100.1

  2. XM_037731054.1 → XP_037586982.1  syndecan-2 isoform X2

    Conserved Domains (1) summary
    pfam01034
    Location:132 → 193
    Syndecan; Syndecan domain

  3. XM_037731055.1 → XP_037586983.1  syndecan-2 isoform X3

    UniProtKB/TrEMBL
    A0A2K5R0F0
    Conserved Domains (1) summary
    pfam01034
    Location:109 → 170
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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