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ndst1b N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108278613, updated on 20-Aug-2024

Summary

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Gene symbol
ndst1b
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b
See related
EnsemblRapid:ENSIPUG00020029348
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See ndst1b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 18 NC_030433.2 (11127260..11215895, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 18 NC_030433.1 (10674897..10759996, complement)

Chromosome 18 - NC_030433.2Genomic Context describing neighboring genes Neighboring gene SLC35A4 upstream open reading frame protein Neighboring gene CD74 molecule, major histocompatibility complex, class II invariant chain b Neighboring gene ribosomal protein S14 Neighboring gene RNA binding motif protein 22 Neighboring gene myozenin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030433.2 Reference Coco_2.0 Primary Assembly

    Range
    11127260..11215895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017492063.3 → XP_017347552.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1b

    UniProtKB/TrEMBL
    A0A2D0SY01
    Related
    ENSIPUP00020054686.1, ENSIPUT00020070741.1

  2. XM_047161760.2 → XP_047017716.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1b

    UniProtKB/TrEMBL
    A0A2D0SY01
Nucleotide Protein
Heading Accession and Version

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