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sgcg sarcoglycan, gamma [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108278201, updated on 20-Aug-2024

Summary

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Gene symbol
sgcg
Gene description
sarcoglycan, gamma
See related
EnsemblRapid:ENSIPUG00020016184
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See sgcg in Genome Data Viewer
Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 17 NC_030432.2 (15931945..15943409, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 17 NC_030432.1 (10881386..10892814, complement)

Chromosome 17 - NC_030432.2Genomic Context describing neighboring genes Neighboring gene mitochondrial intermediate peptidase a Neighboring gene tumor necrosis factor receptor superfamily, member 19 Neighboring gene sacsin molecular chaperone Neighboring gene potassium channel subfamily K member 13 Neighboring gene trafficking protein particle complex subunit 4 Neighboring gene solute carrier family 37 member 4a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030432.2 Reference Coco_2.0 Primary Assembly

    Range
    15931945..15943409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047161574.2 → XP_047017530.1  gamma-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A979FCQ4

  2. XM_017491411.2 → XP_017346900.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2D0SWJ8

  3. XM_017491412.2 → XP_017346901.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2D0SWJ8

  4. XM_017491410.2 → XP_017346899.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2D0SWJ8
    Related
    ENSIPUP00020032735.1, ENSIPUT00020038487.1
Nucleotide Protein
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Gene LinkOut

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