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tjp2a tight junction protein 2a (zona occludens 2) [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108276877, updated on 20-Aug-2024

Summary

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Gene symbol
tjp2a
Gene description
tight junction protein 2a (zona occludens 2)
See related
EnsemblRapid:ENSIPUG00020016379
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
tjp2
Orthologs
zebrafish all
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Genomic context

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See tjp2a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 16 NC_030431.2 (26965256..26983246, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 16 NC_030431.1 (120750..138687)

Chromosome 16 - NC_030431.2Genomic Context describing neighboring genes Neighboring gene MAM domain containing 2b Neighboring gene amyloid beta (A4) precursor protein-binding, family A, member 1b Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type I, beta a Neighboring gene actin related protein 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction protein ZO-2a
Names
tight junction protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030431.2 Reference Coco_2.0 Primary Assembly

    Range
    26965256..26983246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017488927.3 → XP_017344416.2  tight junction protein ZO-2a isoform X2

    UniProtKB/TrEMBL
    A0A2D0SPJ5
    Related
    ENSIPUP00020034508.1, ENSIPUT00020040518.1

  2. XM_017488926.3 → XP_017344415.2  tight junction protein ZO-2a isoform X1

    UniProtKB/TrEMBL
    A0A2D0SQ56
    Related
    ENSIPUP00020034499.1, ENSIPUT00020040509.1
Nucleotide Protein
Heading Accession and Version

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