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dcps decapping enzyme, scavenger [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108276556, updated on 24-Aug-2024

Summary

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Gene symbol
dcps
Gene description
decapping enzyme, scavenger
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See dcps in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 16 NC_030431.2 (2996041..2998745)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 16 NC_030431.1 (22995155..22997858, complement)

Chromosome 16 - NC_030431.2Genomic Context describing neighboring genes Neighboring gene ribosomal protein S25 Neighboring gene STT3 oligosaccharyltransferase complex catalytic subunit A Neighboring gene FAD-dependent oxidoreductase domain containing 1 Neighboring gene potassium inwardly rectifying channel subfamily J member 1b Neighboring gene somatolactin beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA 7-methylguanosine cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
m7GpppX diphosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030431.2 Reference Coco_2.0 Primary Assembly

    Range
    2996041..2998745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017488319.3 → XP_017343808.1  m7GpppX diphosphatase

    UniProtKB/TrEMBL
    A0A2D0SM76
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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