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gata5 GATA binding protein 5 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108275897, updated on 20-Aug-2024

Summary

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Gene symbol
gata5
Gene description
GATA binding protein 5
See related
EnsemblRapid:ENSIPUG00020029896
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
gata5-a
Orthologs
human zebrafish all
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Genomic context

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See gata5 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 15 NC_030430.2 (13204546..13212672, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 15 NC_030430.1 (12641197..12649205, complement)

Chromosome 15 - NC_030430.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128635163 Neighboring gene HCK proto-oncogene, Src family tyrosine kinase Neighboring gene retinoblastoma binding protein 8-like Neighboring gene uncharacterized LOC124628982 Neighboring gene uncharacterized LOC108275537

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor GATA-5
Names
GATA-binding factor 5-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030430.2 Reference Coco_2.0 Primary Assembly

    Range
    13204546..13212672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017486990.3 → XP_017342479.1  transcription factor GATA-5 isoform X2

    UniProtKB/TrEMBL
    A0A2D0SIE7

  2. XM_047160508.2 → XP_047016464.1  transcription factor GATA-5 isoform X3

    UniProtKB/TrEMBL
    A0A979F8C5
    Related
    ENSIPUP00020055767.1, ENSIPUT00020072186.1

  3. XM_017486988.3 → XP_017342477.1  transcription factor GATA-5 isoform X1

    UniProtKB/TrEMBL
    W5UD88

  4. XM_017486989.3 → XP_017342478.1  transcription factor GATA-5 isoform X1

    UniProtKB/TrEMBL
    W5UD88
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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