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xpot exportin, tRNA (nuclear export receptor for tRNAs) [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108274977, updated on 20-Aug-2024

Summary

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Gene symbol
xpot
Gene description
exportin, tRNA (nuclear export receptor for tRNAs)
See related
EnsemblRapid:ENSIPUG00020010447
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
Exportin-T
Orthologs
human zebrafish all
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Genomic context

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See xpot in Genome Data Viewer
Location:
chromosome: 14
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 14 NC_030429.2 (2350130..2360456, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 14 NC_030429.1 (25123847..25133811)

Chromosome 14 - NC_030429.2Genomic Context describing neighboring genes Neighboring gene enoyl CoA hydratase domain containing 3 Neighboring gene F-box protein 7 Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene parathyroid hormone-like hormone a Neighboring gene uncharacterized LOC128634941

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA re-export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-T
Names
exportin for tRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030429.2 Reference Coco_2.0 Primary Assembly

    Range
    2350130..2360456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017485460.3 → XP_017340949.1  exportin-T isoform X2

    UniProtKB/TrEMBL
    W5U652
    Related
    ENSIPUP00020019769.1, ENSIPUT00020023495.1

  2. XM_053685810.1 → XP_053541785.1  exportin-T isoform X1

    UniProtKB/TrEMBL
    A0A9F7RJD4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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