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dus3l dihydrouridine synthase 3-like (S. cerevisiae) [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108274798, updated on 20-Aug-2024

Summary

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Gene symbol
dus3l
Gene description
dihydrouridine synthase 3-like (S. cerevisiae)
See related
EnsemblRapid:ENSIPUG00020028289
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See dus3l in Genome Data Viewer
Location:
chromosome: 14
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 14 NC_030429.2 (28220213..28228665, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 14 NC_030429.1 (924046..932485)

Chromosome 14 - NC_030429.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 42 Neighboring gene mucin-3A Neighboring gene transcription termination factor 1, mitochondrial Neighboring gene 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA dihydrouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Names
dihydrouridine synthase 3 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030429.2 Reference Coco_2.0 Primary Assembly

    Range
    28220213..28228665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017485176.2 → XP_017340665.1  tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2

    UniProtKB/TrEMBL
    A0A2D0SEJ4
    Related
    ENSIPUP00020053242.1, ENSIPUT00020068450.1

  2. XM_017485175.1 → XP_017340664.1  tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1

    UniProtKB/TrEMBL
    A0A2D0SD64
    Related
    ENSIPUP00020053236.1, ENSIPUT00020068444.1

  3. XM_017485179.3 → XP_017340668.1  tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X3

    UniProtKB/TrEMBL
    A0A2D0SD66

  4. XM_017485178.2 → XP_017340667.1  tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X3

    UniProtKB/TrEMBL
    A0A2D0SD66
    Related
    ENSIPUP00020053216.1, ENSIPUT00020068424.1
Nucleotide Protein
Heading Accession and Version

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