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aarsd1 alanyl-tRNA synthetase domain containing 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108274307, updated on 20-Aug-2024

Summary

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Gene symbol
aarsd1
Gene description
alanyl-tRNA synthetase domain containing 1
See related
EnsemblRapid:ENSIPUG00020011452
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See aarsd1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 13 NC_030428.2 (7800374..7813829, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 13 NC_030428.1 (21316700..21329751)

Chromosome 13 - NC_030428.2Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphatase catalytic subunit 1a, tandem duplicate 1 Neighboring gene glucose-6-phosphatase catalytic subunit 1a, tandem duplicate 2 Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene transfer RNA arginine (anticodon UCG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Ser-tRNA(Ala) hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of translational fidelity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanyl-tRNA editing protein Aarsd1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030428.2 Reference Coco_2.0 Primary Assembly

    Range
    7800374..7813829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017484404.3 → XP_017339893.1  alanyl-tRNA editing protein Aarsd1

    UniProtKB/TrEMBL
    A0A2D0SAY0
    Related
    ENSIPUP00020022518.1, ENSIPUT00020026250.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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