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sgca sarcoglycan, alpha [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108273949, updated on 20-Aug-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSIPUG00020010565
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
Sgce
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 13 NC_030428.2 (4499356..4512389)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 13 NC_030428.1 (23943248..23956350, complement)

Chromosome 13 - NC_030428.2Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing, family M (with RUN domain) member 1 Neighboring gene Rho GTPase activating protein 27 Neighboring gene collagen, type I, alpha 1b Neighboring gene uncharacterized LOC108273950 Neighboring gene inactive all-trans-retinol 13,14-reductase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan
Names
Epsilon-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030428.2 Reference Coco_2.0 Primary Assembly

    Range
    4499356..4512389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017483660.3 → XP_017339149.2  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A2D0S8S8, W5UD10
    Related
    ENSIPUP00020020043.1, ENSIPUT00020023769.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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