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hs3st3l heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108273751, updated on 20-Aug-2024

Summary

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Gene symbol
hs3st3l
Gene description
heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like
See related
EnsemblRapid:ENSIPUG00020008458
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See hs3st3l in Genome Data Viewer
Location:
chromosome: 13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 13 NC_030428.2 (10473527..10484363)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 13 NC_030428.1 (18733684..18744259, complement)

Chromosome 13 - NC_030428.2Genomic Context describing neighboring genes Neighboring gene myosin phosphatase Rho interacting protein Neighboring gene dehydrogenase/reductase (SDR family) member 7Cb Neighboring gene gsg1-like 2b Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene glucagon-like peptide 2 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030428.2 Reference Coco_2.0 Primary Assembly

    Range
    10473527..10484363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017483236.3 → XP_017338725.1  heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like

    UniProtKB/TrEMBL
    A0A2D0S922
    Related
    ENSIPUP00020014665.1, ENSIPUT00020018075.1
Nucleotide Protein
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