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mgat1b alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108272752, updated on 20-Aug-2024

Summary

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Gene symbol
mgat1b
Gene description
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b
See related
EnsemblRapid:ENSIPUG00020009538
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
MGAT1
Orthologs
zebrafish all
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Genomic context

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See mgat1b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 12 NC_030427.2 (26338512..26351385)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 12 NC_030427.1 (21521304..21533734)

Chromosome 12 - NC_030427.2Genomic Context describing neighboring genes Neighboring gene chromosome 12 C6orf47 homolog Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 11 Neighboring gene valyl-tRNA synthetase 2, mitochondrial Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B Neighboring gene RNA polymerase I subunit H Neighboring gene general transcription factor IIH, polypeptide 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030427.2 Reference Coco_2.0 Primary Assembly

    Range
    26338512..26351385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017481445.3 → XP_017336934.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b isoform X1

    UniProtKB/TrEMBL
    W5UI97
    Related
    ENSIPUP00020017201.1, ENSIPUT00020020927.1

  2. XM_017481446.3 → XP_017336935.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b isoform X2

    UniProtKB/TrEMBL
    A0A2D0S2F6
    Related
    ENSIPUP00020017198.1, ENSIPUT00020020924.1

  3. XM_017481449.3 → XP_017336938.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b isoform X2

    UniProtKB/TrEMBL
    A0A2D0S2F6

  4. XM_017481450.2 → XP_017336939.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b isoform X2

    UniProtKB/TrEMBL
    A0A2D0S2F6

  5. XM_017481448.3 → XP_017336937.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b isoform X2

    UniProtKB/TrEMBL
    A0A2D0S2F6
Nucleotide Protein
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Gene LinkOut

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