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plecb plectin b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108270367, updated on 20-Aug-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
See related
EnsemblRapid:ENSIPUG00020022001
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 1
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 1 NC_030416.2 (24291351..24413263)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 1 NC_030416.1 (23356962..23478108)

Chromosome 1 - NC_030416.2Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit E, a Neighboring gene R-spondin 2 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030416.2 Reference Coco_2.0 Primary Assembly

    Range
    24291351..24413263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053683121.1 → XP_053539096.1  plectin isoform X10

    UniProtKB/TrEMBL
    A0A9F7RLG8

  2. XM_053683160.1 → XP_053539135.1  plectin isoform X25

    UniProtKB/TrEMBL
    A0A9F7R5H2
    Related
    ENSIPUP00020043822.1, ENSIPUT00020053539.1

  3. XM_053683126.1 → XP_053539101.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0A9F7TND0

  4. XM_053683132.1 → XP_053539107.1  plectin isoform X14

    UniProtKB/TrEMBL
    A0A9F7RFA9

  5. XM_053683156.1 → XP_053539131.1  plectin isoform X24

    UniProtKB/TrEMBL
    A0A9F7TNE1

  6. XM_053683144.1 → XP_053539119.1  plectin isoform X18

    UniProtKB/TrEMBL
    A0A9F7TN93
    Related
    ENSIPUP00020043820.1, ENSIPUT00020053537.1

  7. XM_053683145.1 → XP_053539120.1  plectin isoform X20

    UniProtKB/TrEMBL
    A0A9F7R5F8

  8. XM_053683151.1 → XP_053539126.1  plectin isoform X22

    UniProtKB/TrEMBL
    A0A9F7RLI4

  9. XM_053683152.1 → XP_053539127.1  plectin isoform X23

    UniProtKB/TrEMBL
    A0A9F7RNR9

  10. XM_017476980.3 → XP_017332469.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A2D0RPN8

  11. XM_053683115.1 → XP_053539090.1  plectin isoform X8

    UniProtKB/TrEMBL
    A0A9F7R5D3
    Related
    ENSIPUP00020043819.1, ENSIPUT00020053536.1

  12. XM_017477016.3 → XP_017332505.1  plectin isoform X4

    UniProtKB/TrEMBL
    A0A2D0RRC2

  13. XM_017476997.3 → XP_017332486.1  plectin isoform X2

    UniProtKB/TrEMBL
    A0A2D0RQN1
    Related
    ENSIPUP00020043818.1, ENSIPUT00020053535.1

  14. XM_053683091.1 → XP_053539066.1  plectin isoform X5

    UniProtKB/TrEMBL
    A0A9F7RLE9
    Related
    ENSIPUP00020043816.1, ENSIPUT00020053533.1

  15. XM_017477007.3 → XP_017332496.1  plectin isoform X3

    UniProtKB/TrEMBL
    A0A2D0RQP1

  16. XM_053683102.1 → XP_053539077.1  plectin isoform X6

    UniProtKB/TrEMBL
    A0A9F7RF86
    Related
    ENSIPUP00020043817.1, ENSIPUT00020053534.1

  17. XM_053683109.1 → XP_053539084.1  plectin isoform X7

    UniProtKB/TrEMBL
    A0A9F7TJ49

  18. XM_053683119.1 → XP_053539094.1  plectin isoform X9

    UniProtKB/TrEMBL
    A0A9F7R9P8

  19. XM_053683124.1 → XP_053539099.1  plectin isoform X11

    UniProtKB/TrEMBL
    A0A9F7TJ56

  20. XM_053683130.1 → XP_053539105.1  plectin isoform X13

    UniProtKB/TrEMBL
    A0A9F7R5E6

  21. XM_053683138.1 → XP_053539113.1  plectin isoform X15

    UniProtKB/TrEMBL
    A0A9F7RLZ7
    Related
    ENSIPUP00020043697.1, ENSIPUT00020053414.1

  22. XM_053683140.1 → XP_053539115.1  plectin isoform X16

    UniProtKB/TrEMBL
    A0A9F7REG3

  23. XM_053683143.1 → XP_053539118.1  plectin isoform X17

    UniProtKB/TrEMBL
    A0A9F7TKX7

  24. XM_017477115.3 → XP_017332604.1  plectin isoform X19

    UniProtKB/TrEMBL
    A0A2D0RQ32

  25. XM_017477123.3 → XP_017332612.1  plectin isoform X21

    UniProtKB/TrEMBL
    A0A2D0RQ29
    Related
    ENSIPUP00020043728.1, ENSIPUT00020053445.1
Nucleotide Protein
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