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edc3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108268824, updated on 20-Aug-2024

Summary

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Gene symbol
edc3
Gene description
enhancer of mRNA decapping 3 homolog (S. cerevisiae)
See related
EnsemblRapid:ENSIPUG00020016148
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See edc3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 8 NC_030423.2 (17131986..17139765)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 8 NC_030423.1 (16702561..16710369)

Chromosome 8 - NC_030423.2Genomic Context describing neighboring genes Neighboring gene ERGIC and golgi 2 Neighboring gene KxDL motif containing 1 Neighboring gene C-terminal Src kinase Neighboring gene complexin 3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
enhancer of mRNA-decapping protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030423.2 Reference Coco_2.0 Primary Assembly

    Range
    17131986..17139765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017474059.3 → XP_017329548.1  enhancer of mRNA-decapping protein 3

    UniProtKB/TrEMBL
    A0A2D0RG88
    Related
    ENSIPUP00020032610.1, ENSIPUT00020038362.1

  2. XM_047157235.2 → XP_047013191.1  enhancer of mRNA-decapping protein 3

    UniProtKB/TrEMBL
    A0A2D0RG88
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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