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ogt.1 O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108268666, updated on 20-Aug-2024

Summary

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Gene symbol
ogt.1
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1
See related
EnsemblRapid:ENSIPUG00020009654
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
ogt
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 8 NC_030423.2 (4327412..4343774, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 8 NC_030423.1 (4119151..4135552, complement)

Chromosome 8 - NC_030423.2Genomic Context describing neighboring genes Neighboring gene centrin, EF-hand protein, 2 Neighboring gene germ cell nuclear acidic peptidase Neighboring gene FH2 domain containing 2 Neighboring gene small nucleolar RNA SNORA74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030423.2 Reference Coco_2.0 Primary Assembly

    Range
    4327412..4343774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017473742.3 → XP_017329231.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X4

    UniProtKB/TrEMBL
    A0A2D0RGH8

  2. XM_017473740.3 → XP_017329229.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    UniProtKB/TrEMBL
    A0A2D0RFB3
    Related
    ENSIPUP00020020564.1, ENSIPUT00020024296.1

  3. XM_017473741.3 → XP_017329230.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3

    UniProtKB/TrEMBL
    A0A2D0RH54
    Related
    ENSIPUP00020020568.1, ENSIPUT00020024300.1

  4. XM_017473739.3 → XP_017329228.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    UniProtKB/TrEMBL
    A0A2D0RFC6

  5. XM_053682419.1 → XP_053538394.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X5

    UniProtKB/TrEMBL
    A0A9F7TIF9
Nucleotide Protein
Heading Accession and Version

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