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kirrel1a kirre like nephrin family adhesion molecule 1a [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108267762, updated on 20-Aug-2024

Summary

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Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
EnsemblRapid:ENSIPUG00020015387
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
kirrel; kirrel1
Orthologs
zebrafish all
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Genomic context

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See kirrel1a in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 7 NC_030422.2 (14128904..14160842, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 7 NC_030422.1 (12306698..12335444, complement)

Chromosome 7 - NC_030422.2Genomic Context describing neighboring genes Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene uncharacterized LOC108268185 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1a
Names
Kin of IRRE-like protein 1
kin of IRRE like
kirre like nephrin family adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030422.2 Reference Coco_2.0 Primary Assembly

    Range
    14128904..14160842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017472164.3 → XP_017327653.1  kin of IRRE-like protein 1a isoform X1

    UniProtKB/TrEMBL
    A0A2D0RAR8
    Related
    ENSIPUP00020030502.1, ENSIPUT00020036254.1

  2. XM_017472165.3 → XP_017327654.1  kin of IRRE-like protein 1a isoform X2

    UniProtKB/TrEMBL
    W5UF77
    Related
    ENSIPUP00020030506.1, ENSIPUT00020036258.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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