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zgc:112962 uncharacterized LOC108265592 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108265592, updated on 20-Aug-2024

Summary

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Gene symbol
zgc:112962
Gene description
uncharacterized LOC108265592
See related
EnsemblRapid:ENSIPUG00020020700
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See zgc:112962 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 5 NC_030420.2 (23406414..23414175)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 5 NC_030420.1 (22320588..22328468, complement)

Chromosome 5 - NC_030420.2Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domains 1 Neighboring gene aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 Neighboring gene torsin-1A-interacting protein 2 Neighboring gene uncharacterized LOC108266038

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030420.2 Reference Coco_2.0 Primary Assembly

    Range
    23406414..23414175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053680343.1 → XP_053536318.1  torsin-1A-interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9F7RA59

  2. XM_053680344.1 → XP_053536319.1  torsin-1A-interacting protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A9F7R4F1

  3. XM_017468117.3 → XP_017323606.1  torsin-1A-interacting protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A2D0R0Q1
    Related
    ENSIPUP00020041108.1, ENSIPUT00020049912.1

  4. XM_053680342.1 → XP_053536317.1  torsin-1A-interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A9F7RA59
Nucleotide Protein
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