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LOC108265513 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108265513, updated on 20-Aug-2024

Summary

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Gene symbol
LOC108265513
Gene description
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3
See related
EnsemblRapid:ENSIPUG00020004144
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
b3gnt3
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Genomic context

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See LOC108265513 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 5 NC_030420.2 (34555478..34562949)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 5 NC_030420.1 (32702322..32710937, complement)

Chromosome 5 - NC_030420.2Genomic Context describing neighboring genes Neighboring gene LON peptidase N-terminal domain and ring finger 1 Neighboring gene very low-density lipoprotein receptor Neighboring gene N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3-like Neighboring gene craniofacial development protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3
Names
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030420.2 Reference Coco_2.0 Primary Assembly

    Range
    34555478..34562949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017467909.3 → XP_017323398.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A2D0QYB9
    Related
    ENSIPUP00020006474.1, ENSIPUT00020008272.1

  2. XM_017467912.3 → XP_017323401.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A2D0R058

  3. XM_053680498.1 → XP_053536473.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A2D0QYB9

  4. XM_053680499.1 → XP_053536474.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A2D0R058

  5. XM_017467911.3 → XP_017323400.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A2D0QYB9

  6. XM_053680500.1 → XP_053536475.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 isoform X3

    UniProtKB/TrEMBL
    A0A979EV84
    Related
    ENSIPUP00020006470.1, ENSIPUT00020008268.1

  7. XM_047155772.2 → XP_047011728.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 isoform X3

    UniProtKB/TrEMBL
    A0A979EV84
    Related
    ENSIPUP00020006480.1, ENSIPUT00020008278.1

  8. XM_053680501.1 → XP_053536476.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 isoform X3

    UniProtKB/TrEMBL
    A0A979EV84
Nucleotide Protein
Heading Accession and Version

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