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tars3 threonyl-tRNA synthetase 3 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108264327, updated on 20-Aug-2024

Summary

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Gene symbol
tars3
Gene description
threonyl-tRNA synthetase 3
See related
EnsemblRapid:ENSIPUG00020008240
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
tarsl2
Orthologs
human zebrafish all
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Genomic context

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See tars3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 4 NC_071284.1 (31279032..31301941, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) X NC_030419.1 (30185142..30205715, complement)

Chromosome 4 - NC_071284.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 49 Neighboring gene La ribonucleoprotein 6, translational regulator a Neighboring gene TM2 domain containing 3 Neighboring gene unc-51 like kinase 3 Neighboring gene growth arrest-specific protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables threonine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in threonyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
threonine--tRNA ligase 1, cytoplasmic
Names
threonyl-tRNA synthetase like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_071284.1 Reference Coco_2.0 Primary Assembly

    Range
    31279032..31301941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053678160.1 → XP_053534135.1  threonine--tRNA ligase 1, cytoplasmic

    UniProtKB/TrEMBL
    A0A9F7R563
    Related
    ENSIPUP00020015251.1, ENSIPUT00020018661.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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