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galnt2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108263408, updated on 20-Aug-2024

Summary

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Gene symbol
galnt2
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
See related
EnsemblRapid:ENSIPUG00020001621
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See galnt2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 3 NC_030418.2 (27525188..27662119, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 3 NC_030418.1 (9450242..9587534)

Chromosome 3 - NC_030418.2Genomic Context describing neighboring genes Neighboring gene angiotensinogen Neighboring gene component of oligomeric golgi complex 2 Neighboring gene piggyBac transposable element derived 5 Neighboring gene kelch-like protein 10 Neighboring gene kelch-like protein 10 Neighboring gene uncharacterized si:ch73-109d9.1 Neighboring gene zinc finger protein 764

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030418.2 Reference Coco_2.0 Primary Assembly

    Range
    27525188..27662119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053679837.1 → XP_053535812.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A9F7RI81
    Related
    ENSIPUP00020003591.1, ENSIPUT00020003782.1

  2. XM_017464154.3 → XP_017319643.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    W5UB59
    Related
    ENSIPUP00020003599.1, ENSIPUT00020003789.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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