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LOC108263097 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108263097, updated on 20-Aug-2024

Summary

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Gene symbol
LOC108263097
Gene description
4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9
See related
EnsemblRapid:ENSIPUG00020015615
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
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Genomic context

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See LOC108263097 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 3 NC_030418.2 (1832704..1840609)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 3 NC_030418.1 (33840792..33848693, complement)

Chromosome 3 - NC_030418.2Genomic Context describing neighboring genes Neighboring gene immunoglobulin lambda-1 light chain Neighboring gene 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 Neighboring gene LBH regulator of WNT signaling pathway Neighboring gene SH2 domain containing 4Ba Neighboring gene uncharacterized LOC108263096 Neighboring gene pro-neuregulin-3, membrane-bound isoform

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030418.2 Reference Coco_2.0 Primary Assembly

    Range
    1832704..1840609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017463559.3 → XP_017319048.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9

    UniProtKB/TrEMBL
    A0A2D0QKQ0, W5UG94
    Related
    ENSIPUP00020031149.1, ENSIPUT00020036901.1

  2. XM_017463560.2 → XP_017319049.1  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9

    UniProtKB/TrEMBL
    A0A2D0QKQ0, W5UG94
    Related
    ENSIPUP00020031148.1, ENSIPUT00020036900.1
Nucleotide Protein
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