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LOC108260983 exportin-5 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108260983, updated on 20-Aug-2024

Summary

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Gene symbol
LOC108260983
Gene description
exportin-5
See related
EnsemblRapid:ENSIPUG00020019397
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
xpo5
Orthologs
human zebrafish all
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Genomic context

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See LOC108260983 in Genome Data Viewer
Location:
chromosome: 29
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 29 NC_030444.2 (7616744..7642422, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 29 NC_030444.1 (7011652..7037466, complement)

Chromosome 29 - NC_030444.2Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase MARK1 Neighboring gene EGF containing fibulin extracellular matrix protein 1 Neighboring gene uncharacterized LOC128629430 Neighboring gene tumor protein p53 binding protein, 2a Neighboring gene Kv channel-interacting protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear export signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA nuclear export complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030444.2 Reference Coco_2.0 Primary Assembly

    Range
    7616744..7642422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017461765.3 → XP_017317254.1  exportin-5

    UniProtKB/TrEMBL
    W5U6M6
    Related
    ENSIPUP00020038888.1, ENSIPUT00020046633.1
Nucleotide Protein
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Gene LinkOut

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