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dctpp1 dCTP pyrophosphatase 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108260658, updated on 24-Aug-2024

Summary

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Gene symbol
dctpp1
Gene description
dCTP pyrophosphatase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See dctpp1 in Genome Data Viewer
Location:
chromosome: 29
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 29 NC_030444.2 (13169433..13171819, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 29 NC_030444.1 (12374178..12375221, complement)

Chromosome 29 - NC_030444.2Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene F-box and WD repeat domain containing 7 Neighboring gene glutamyl-tRNA(Gln) amidotransferase, subunit B Neighboring gene FHF complex subunit HOOK interacting protein 1Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleoside triphosphate diphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleoside triphosphate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030444.2 Reference Coco_2.0 Primary Assembly

    Range
    13169433..13171819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017461093.3 → XP_017316582.1  glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial

    UniProtKB/TrEMBL
    W5ULH5
Nucleotide Protein
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Gene LinkOut

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