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aptx aprataxin [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108260610, updated on 20-Aug-2024

Summary

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Gene symbol
aptx
Gene description
aprataxin
See related
EnsemblRapid:ENSIPUG00020001431
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See aptx in Genome Data Viewer
Location:
chromosome: 29
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 29 NC_030444.2 (16175703..16180774, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 29 NC_030444.1 (15000016..15005235, complement)

Chromosome 29 - NC_030444.2Genomic Context describing neighboring genes Neighboring gene cell surface glycoprotein 1 Neighboring gene uncharacterized LOC128629474 Neighboring gene ATP-binding cassette, sub-family A (ABC1), member 1A Neighboring gene solute carrier family 44 member 1a Neighboring gene uncharacterized LOC124626569 Neighboring gene oxysterol binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA 5'-adenosine monophosphate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-strand break-containing DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in single strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aprataxin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030444.2 Reference Coco_2.0 Primary Assembly

    Range
    16175703..16180774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017461026.3 → XP_017316515.1  aprataxin isoform X1

    UniProtKB/TrEMBL
    A0A2D0QGI4
    Related
    ENSIPUP00020003069.1, ENSIPUT00020003260.1

  2. XM_017461027.3 → XP_017316516.1  aprataxin isoform X2

    UniProtKB/TrEMBL
    A0A2D0QFL8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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