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kptn kaptin (actin binding protein) [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108259853, updated on 20-Aug-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
See related
EnsemblRapid:ENSIPUG00020021541
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: 28
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 28 NC_030443.2 (1877150..1882013, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 28 NC_030443.1 (1412812..1417473, complement)

Chromosome 28 - NC_030443.2Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 7a Neighboring gene heterogeneous nuclear ribonucleoprotein L Neighboring gene cone-rod homeobox Neighboring gene cysteine-rich motor neuron 1 protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030443.2 Reference Coco_2.0 Primary Assembly

    Range
    1877150..1882013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053676952.1 → XP_053532927.1  KICSTOR complex protein kaptin

    UniProtKB/TrEMBL
    W5U6Y3
    Related
    ENSIPUP00020042933.1, ENSIPUT00020052165.1
Nucleotide Protein
Heading Accession and Version

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