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aars2 alanyl-tRNA synthetase 2, mitochondrial (putative) [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108259393, updated on 20-Aug-2024

Summary

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Gene symbol
aars2
Gene description
alanyl-tRNA synthetase 2, mitochondrial (putative)
See related
EnsemblRapid:ENSIPUG00020011803
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See aars2 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 27 NC_030442.2 (1806634..1814871)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 27 NC_030442.1 (16777717..16785870, complement)

Chromosome 27 - NC_030442.2Genomic Context describing neighboring genes Neighboring gene protein PET117 homolog, mitochondrial Neighboring gene ribosome binding protein 1b Neighboring gene B-cell receptor CD22 Neighboring gene sialoadhesin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amino acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanine--tRNA ligase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030442.2 Reference Coco_2.0 Primary Assembly

    Range
    1806634..1814871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017458859.3 → XP_017314348.1  alanine--tRNA ligase, mitochondrial

    UniProtKB/TrEMBL
    A0A2D0Q6M4
    Related
    ENSIPUP00020023133.1, ENSIPUT00020027174.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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