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dtl denticleless E3 ubiquitin protein ligase homolog (Drosophila) [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108257855, updated on 20-Aug-2024

Summary

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Gene symbol
dtl
Gene description
denticleless E3 ubiquitin protein ligase homolog (Drosophila)
See related
EnsemblRapid:ENSIPUG00020006984
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See dtl in Genome Data Viewer
Location:
chromosome: 25
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 25 NC_030440.2 (3488391..3500742)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 25 NC_030440.1 (16088600..16100554, complement)

Chromosome 25 - NC_030440.2Genomic Context describing neighboring genes Neighboring gene NIMA-related kinase 2 Neighboring gene lysophosphatidylglycerol acyltransferase 1 Neighboring gene integrator complex subunit 7 Neighboring gene protein phosphatase 2, regulatory subunit B' Neighboring gene T cell activation RhoGTPase activating protein b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic G2 DNA damage checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
denticleless protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030440.2 Reference Coco_2.0 Primary Assembly

    Range
    3488391..3500742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017455952.3 → XP_017311441.1  denticleless protein homolog isoform X2

    UniProtKB/TrEMBL
    A0A2D0Q182

  2. XM_017455951.3 → XP_017311440.1  denticleless protein homolog isoform X1

    UniProtKB/TrEMBL
    A0A2D0Q257
    Related
    ENSIPUP00020011134.1, ENSIPUT00020014359.1
Nucleotide Protein
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