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colgalt1a collagen beta(1-O)galactosyltransferase 1a [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108257422, updated on 20-Aug-2024

Summary

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Gene symbol
colgalt1a
Gene description
collagen beta(1-O)galactosyltransferase 1a
See related
EnsemblRapid:ENSIPUG00020009630
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
colgalt1
Orthologs
zebrafish all
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Genomic context

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See colgalt1a in Genome Data Viewer
Location:
chromosome: 24
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 24 NC_030439.2 (18508792..18521172, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 24 NC_030439.1 (16338487..16350914, complement)

Chromosome 24 - NC_030439.2Genomic Context describing neighboring genes Neighboring gene LIM homeobox transcription factor 1, alpha-like Neighboring gene GEM interacting protein Neighboring gene zinc finger protein 432 Neighboring gene 6-phosphogluconolactonase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1
Names
Procollagen galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030439.2 Reference Coco_2.0 Primary Assembly

    Range
    18508792..18521172 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017455175.3 → XP_017310664.1  procollagen galactosyltransferase 1

    UniProtKB/TrEMBL
    W5UGQ7
    Related
    ENSIPUP00020017459.1, ENSIPUT00020021185.1
Nucleotide Protein
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