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ext1c exostoses (multiple) 1c [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108257140, updated on 20-Aug-2024

Summary

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Gene symbol
ext1c
Gene description
exostoses (multiple) 1c
See related
EnsemblRapid:ENSIPUG00020023320
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
ext1
Orthologs
zebrafish all
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Genomic context

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See ext1c in Genome Data Viewer
Location:
chromosome: 24
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 24 NC_030439.2 (5529185..5587840)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 24 NC_030439.1 (3520840..3577492)

Chromosome 24 - NC_030439.2Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 36 Neighboring gene thiopurine S-methyltransferase, tandem duplicate 1 Neighboring gene neurochondrin Neighboring gene Med30 domain-containing protein Neighboring gene transcription factor AP-2 epsilon

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1c
Names
exostosin glycosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030439.2 Reference Coco_2.0 Primary Assembly

    Range
    5529185..5587840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047150666.2 → XP_047006622.1  exostosin-1c

    UniProtKB/TrEMBL
    W5UJD3
    Related
    ENSIPUP00020045719.1, ENSIPUT00020056164.1
Nucleotide Protein
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Gene LinkOut

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