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sfrp1a secreted frizzled-related protein 1a [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108256038, updated on 20-Aug-2024

Summary

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Gene symbol
sfrp1a
Gene description
secreted frizzled-related protein 1a
See related
EnsemblRapid:ENSIPUG00020028949
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
sfrp1
Orthologs
zebrafish all
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Genomic context

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See sfrp1a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 22 NC_030437.2 (2888840..2901470, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 22 NC_030437.1 (17432972..17445586)

Chromosome 22 - NC_030437.2Genomic Context describing neighboring genes Neighboring gene zinc metalloproteinase-disintegrin-like crotastatin Neighboring gene transcriptional and immune response regulator a Neighboring gene zinc finger, matrin-type 4a Neighboring gene lysyl oxidase-like 2b Neighboring gene histone H1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1a
Names
secreted frizzled related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030437.2 Reference Coco_2.0 Primary Assembly

    Range
    2888840..2901470 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047149869.1 → XP_047005825.1  secreted frizzled-related protein 1a

    UniProtKB/TrEMBL
    A0A2D0PN37
    Related
    ENSIPUP00020054249.1, ENSIPUT00020069774.1

  2. XM_017452524.2 → XP_017308013.1  secreted frizzled-related protein 1a

    UniProtKB/TrEMBL
    A0A2D0PN37
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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