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tars1 threonyl-tRNA synthetase 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108255896, updated on 20-Aug-2024

Summary

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Gene symbol
tars1
Gene description
threonyl-tRNA synthetase 1
See related
EnsemblRapid:ENSIPUG00020023348
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See tars1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 22 NC_030437.2 (12043005..12061018)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 22 NC_030437.1 (8507653..8525630, complement)

Chromosome 22 - NC_030437.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 8B Neighboring gene glutathione hydrolase 6 Neighboring gene growth arrest-specific 1a Neighboring gene death-associated protein kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables threonine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in threonyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
threonine--tRNA ligase 1, cytoplasmic
Names
threonine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030437.2 Reference Coco_2.0 Primary Assembly

    Range
    12043005..12061018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017452242.3 → XP_017307731.1  threonine--tRNA ligase 1, cytoplasmic

    UniProtKB/TrEMBL
    A0A2D0PQL9
    Related
    ENSIPUP00020046452.1, ENSIPUT00020057779.1
Nucleotide Protein
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