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cdr2l cerebellar degeneration-related protein 2-like [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108255704, updated on 20-Aug-2024

Summary

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Gene symbol
cdr2l
Gene description
cerebellar degeneration-related protein 2-like
See related
EnsemblRapid:ENSIPUG00020013051
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See cdr2l in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 2 NC_030417.2 (24803885..24817617, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 2 NC_030417.1 (14663209..14676952)

Chromosome 2 - NC_030417.2Genomic Context describing neighboring genes Neighboring gene MAPK regulated corepressor interacting protein 1 Neighboring gene Aly/REF export factor Neighboring gene Rho GDP dissociation inhibitor (GDI) alpha Neighboring gene RecQ helicase-like 5 Neighboring gene E3 ubiquitin-protein ligase TRIM69

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cerebellar degeneration-related protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030417.2 Reference Coco_2.0 Primary Assembly

    Range
    24803885..24817617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017451847.3 → XP_017307336.2  cerebellar degeneration-related protein 2-like

    UniProtKB/TrEMBL
    A0A2D0PPH8
    Related
    ENSIPUP00020026092.1, ENSIPUT00020030554.1
Nucleotide Protein
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Gene LinkOut

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